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bioconda / packages / bioconductor-tximport 1.30.0

Import and summarize transcript-level estimates for transcript- and gene-level analysis

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.8.0
  • osx-64 v1.8.0
  • noarch v1.30.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-tximport
conda install bioconda/label/cf201901::bioconductor-tximport
conda install bioconda/label/gcc7::bioconductor-tximport

Description

Imports transcript-level abundance, estimated counts and transcript lengths, and summarizes into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.


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