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bioconductor-treg

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Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-treg

Usage Tracking

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Description

RNA abundance and cell size parameters could improve RNA-seq deconvolution algorithms to more accurately estimate cell type proportions given the different cell type transcription activity levels. A Total RNA Expression Gene (TREG) can facilitate estimating total RNA content using single molecule fluorescent in situ hybridization (smFISH). We developed a data-driven approach using a measure of expression invariance to find candidate TREGs in postmortem human brain single nucleus RNA-seq. This R package implements the method for identifying candidate TREGs from snRNA-seq data.

About

Summary

Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data

Last Updated

Dec 21, 2024 at 09:21

License

Artistic-2.0

Total Downloads

4.9K

Supported Platforms

noarch