bioconda / packages / bioconductor-tofsims 1.16.0

Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.16.0
  • osx-64  v1.16.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-tofsims
conda install -c bioconda/label/gcc7 bioconductor-tofsims

Description

This packages offers a pipeline for import, processing and analysis of ToF-SIMS 2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is supported. For rawdata, mass calibration, peak picking and peak integration exist. General funcionality includes data binning, scaling, image subsetting and visualization. A range of multivariate tools common in the ToF-SIMS community are implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing package EBImage offers image segmentation functionality.

PRIVACY POLICY  |  EULA (Anaconda Cloud v2.33.29) © 2020 Anaconda, Inc. All Rights Reserved.