bioconda / packages / bioconductor-tofsims 1.22.0

Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.22.0
  • osx-64  v1.22.0
To install this package run one of the following:
conda install -c bioconda bioconductor-tofsims
conda install -c "bioconda/label/gcc7" bioconductor-tofsims

Description

This packages offers a pipeline for import, processing and analysis of ToF-SIMS 2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is supported. For rawdata, mass calibration, peak picking and peak integration exist. General funcionality includes data binning, scaling, image subsetting and visualization. A range of multivariate tools common in the ToF-SIMS community are implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing package EBImage offers image segmentation functionality.


© 2022 Anaconda, Inc. All Rights Reserved. (v2.37.1 f2ec50ef) Legal | Privacy Policy