bioconda / packages / bioconductor-tin 1.26.0

Transcriptome instability analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.12.0
  • osx-64  v1.10.0
  • noarch  v1.26.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-tin
conda install -c bioconda/label/gcc7 bioconductor-tin
conda install -c bioconda/label/cf201901 bioconductor-tin

Description

The TIN package implements a set of tools for transcriptome instability analysis based on exon expression profiles. Deviating exon usage is studied in the context of splicing factors to analyse to what degree transcriptome instability is correlated to splicing factor expression. In the transcriptome instability correlation analysis, the data is compared to both random permutations of alternative splicing scores and expression of random gene sets.


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