bioconductor-tbsignatureprofiler
Profile RNA-Seq Data Using TB Pathway Signatures
Profile RNA-Seq Data Using TB Pathway Signatures
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Gene signatures of TB progression, TB disease, and other TB disease states have been validated and published previously. This package aggregates known signatures and provides computational tools to enlist their usage on other datasets. The TBSignatureProfiler makes it easy to profile RNA-Seq data using these signatures and includes common signature profiling tools including ASSIGN, GSVA, and ssGSEA. Original models for some gene signatures are also available. A shiny app provides some functionality alongside for detailed command line accessibility.
Summary
Profile RNA-Seq Data Using TB Pathway Signatures
Last Updated
Dec 23, 2023 at 00:09
License
MIT + file LICENSE
Total Downloads
10.7K
Supported Platforms