bioconda / packages / bioconductor-targetscoredata 1.24.0

TargetScoreData

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.24.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-targetscoredata
conda install -c bioconda/label/gcc7 bioconductor-targetscoredata

Description

Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)

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