bioconda / packages / bioconductor-systempiper 1.22.0

systemPipeR: NGS workflow and report generation environment

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.0
  • osx-64  v1.12.0
  • noarch  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-systempiper
conda install -c bioconda/label/gcc7 bioconductor-systempiper
conda install -c bioconda/label/cf201901 bioconductor-systempiper

Description

R package for building and running automated end-to-end analysis workflows for a wide range of next generation sequence (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and Ribo-Seq. Important features include a uniform workflow interface across different NGS applications, automated report generation, and support for running both R and command-line software, such as NGS aligners or peak/variant callers, on local computers or compute clusters. Efficient handling of complex sample sets and experimental designs is facilitated by a consistently implemented sample annotation infrastructure. Instructions for using systemPipeR are given in the Overview Vignette (HTML). The remaining Vignettes, linked below, are workflow templates for common NGS use cases.

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