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bioconda / packages / bioconductor-synergyfinder 3.10.0

Calculate and Visualize Synergy Scores for Drug Combinations

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v2.4.0
  • linux-64 v2.4.0
  • noarch v3.10.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-synergyfinder
conda install bioconda/label/cf201901::bioconductor-synergyfinder
conda install bioconda/label/gcc7::bioconductor-synergyfinder

Description

Efficient implementations for analyzing pre-clinical multiple drug combination datasets. It provides efficient implementations for 1.the popular synergy scoring models, including HSA, Loewe, Bliss, and ZIP to quantify the degree of drug combination synergy; 2. higher order drug combination data analysis and synergy landscape visualization for unlimited number of drugs in a combination; 3. statistical analysis of drug combination synergy and sensitivity with confidence intervals and p-values; 4. synergy barometer for harmonizing multiple synergy scoring methods to provide a consensus metric of synergy; 5. evaluation of synergy and sensitivity simultaneously to provide an unbiased interpretation of the clinical potential of the drug combinations. Based on this package, we also provide a web application (http://www.synergyfinder.org) for users who prefer graphical user interface.


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