bioconda / packages / bioconductor-sspaths 1.2.0

ssPATHS: Single Sample PATHway Score


conda install

  • noarch  v1.2.0
To install this package with conda run:
conda install -c bioconda bioconductor-sspaths


This package generates pathway scores from expression data for single samples after training on a reference cohort. The score is generated by taking the expression of a gene set (pathway) from a reference cohort and performing linear discriminant analysis to distinguish samples in the cohort that have the pathway augmented and not. The separating hyperplane is then used to score new samples.

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