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bioconda / packages / bioconductor-ssnappy 1.6.1

Single Sample directioNAl Pathway Perturbation analYsis

Installers

  • linux-64 v1.4.1
  • osx-64 v1.4.1
  • noarch v1.6.1

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-ssnappy

Description

A single sample pathway perturbation testing method for RNA-seq data. The method propagates changes in gene expression down gene-set topologies to compute single-sample directional pathway perturbation scores that reflect potential direction of change. Perturbation scores can be used to test significance of pathway perturbation at both individual-sample and treatment levels.


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