bioconductor-splicewiz
interactive analysis and visualization of alternative splicing in R
interactive analysis and visualization of alternative splicing in R
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The analysis and visualization of alternative splicing (AS) events from RNA sequencing data remains challenging. SpliceWiz is a user-friendly and performance-optimized R package for AS analysis, by processing alignment BAM files to quantify read counts across splice junctions, IRFinder-based intron retention quantitation, and supports novel splicing event identification. We introduce a novel visualization for AS using normalized coverage, thereby allowing visualization of differential AS across conditions. SpliceWiz features a shiny-based GUI facilitating interactive data exploration of results including gene ontology enrichment. It is performance optimized with multi-threaded processing of BAM files and a new COV file format for fast recall of sequencing coverage. Overall, SpliceWiz streamlines AS analysis, enabling reliable identification of functionally relevant AS events for further characterization.
Summary
interactive analysis and visualization of alternative splicing in R
Last Updated
Jan 5, 2025 at 15:26
License
MIT + file LICENSE
Total Downloads
5.8K
Supported Platforms