CMD + K

bioconductor-spiky

Community

Spike-in calibration for cell-free MeDIP

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spiky

Usage Tracking

1.12.0
1.8.0
1.6.0
1.4.0
1.0.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

spiky implements methods and model generation for cfMeDIP (cell-free methylated DNA immunoprecipitation) with spike-in controls. CfMeDIP is an enrichment protocol which avoids destructive conversion of scarce template, making it ideal as a "liquid biopsy," but creating certain challenges in comparing results across specimens, subjects, and experiments. The use of synthetic spike-in standard oligos allows diagnostics performed with cfMeDIP to quantitatively compare samples across subjects, experiments, and time points in both relative and absolute terms.

About

Summary

Spike-in calibration for cell-free MeDIP

Last Updated

Dec 30, 2024 at 02:38

License

GPL-2

Total Downloads

7.5K

Supported Platforms

noarch