bioconda / packages / bioconductor-spikeli 2.48.0

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.40.0
  • noarch  v2.48.0
  • osx-64  v2.40.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-spikeli
conda install -c bioconda/label/gcc7 bioconductor-spikeli
conda install -c bioconda/label/cf201901 bioconductor-spikeli

Description

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

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