bioconda / packages / bioconductor-spectraltad 1.8.0

SpectralTAD: Hierarchical TAD detection using spectral clustering

Installers

conda install

  • noarch  v1.8.0
To install this package with conda run:
conda install -c bioconda bioconductor-spectraltad

Description

SpectralTAD is an R package designed to identify Topologically Associated Domains (TADs) from Hi-C contact matrices. It uses a modified version of spectral clustering that uses a sliding window to quickly detect TADs. The function works on a range of different formats of contact matrices and returns a bed file of TAD coordinates. The method does not require users to adjust any parameters to work and gives them control over the number of hierarchical levels to be returned.


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