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bioconductor-specl

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specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-specl

Usage Tracking

1.40.0
1.36.0
1.34.0
1.32.0
1.28.0
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Downloads (Last 6 months): 0

Description

provides a functions for generating spectra libraries that can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software. The package is developed, tested and used at the Functional Genomics Center Zurich https://fgcz.ch.

About

Summary

specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Last Updated

Dec 14, 2024 at 14:22

License

GPL-3

Total Downloads

35.7K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 1.14.0
macOS-64 Last supported version: 1.14.0