bioconda / packages / bioconductor-specl 1.22.0

specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.0
  • osx-64  v1.14.0
  • noarch  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-specl
conda install -c bioconda/label/gcc7 bioconductor-specl
conda install -c bioconda/label/cf201901 bioconductor-specl

Description

provides a functions for generating spectra libraries that can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software. The package is developed, tested and used at the Functional Genomics Center Zurich http://www.fgcz.ethz.ch.

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