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bioconda / packages / bioconductor-slinky 1.12.0

Putting the fun in LINCS L1000 data analysis

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.12.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-slinky
conda install bioconda/label/gcc7::bioconductor-slinky

Description

Wrappers to query the L1000 metadata available via the clue.io REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.


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