bioconda / packages / bioconductor-slinky 1.6.0

Putting the fun in LINCS L1000 data analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-slinky
conda install -c bioconda/label/gcc7 bioconductor-slinky

Description

Wrappers to query the L1000 metadata available via the clue.io REST API as well as helpers for dealing with LINCS gctx files, extracting data sets of interest, converting to SummarizedExperiment objects, and some facilities for performing streamlined differential expression analysis of these data sets.

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