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bioconda / packages / bioconductor-site2target 1.2.0

An R package to associate peaks and target genes

Installers

  • noarch v1.2.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-site2target

Description

Statistics implemented for both peak-wise and gene-wise associations. In peak-wise associations, the p-value of the target genes of a given set of peaks are calculated. Negative binomial or Poisson distributions can be used for modeling the unweighted peaks targets and log-nromal can be used to model the weighted peaks. In gene-wise associations a table consisting of a set of genes, mapped to specific peaks, is generated using the given rules.


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