bioconda / packages / bioconductor-single.mtec.transcriptomes 1.25.0

Single Cell Transcriptome Data and Analysis of Mouse mTEC cells


Info: This package contains files in non-standard labels.
  • noarch v1.25.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-single.mtec.transcriptomes
conda install -c "bioconda/label/gcc7" bioconductor-single.mtec.transcriptomes


This data package contains the code used to analyse the single-cell RNA-seq and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome analysis reveals coordinated ectopic-gene expression patterns in medullary thymic epithelial cells. This paper was published in Nature Immunology 16,933-941(2015). The data objects provided in this package has been pre-processed: the raw data files can be downloaded from ArrayExpress under the accession identifiers E-MTAB-3346 and E-MTAB-3624. The vignette of this data package provides a documented and reproducible workflow that includes the code that was used to generate each statistic and figure from the manuscript.

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