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bioconductor-simffpe

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NGS Read Simulator for FFPE Tissue

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-simffpe

Usage Tracking

1.18.0
1.14.0
1.12.0
1.10.0
1.6.0
5 / 8 versions selected
Total downloads: 0

Description

The NGS (Next-Generation Sequencing) reads from FFPE (Formalin-Fixed Paraffin-Embedded) samples contain numerous artifact chimeric reads (ACRS), which can lead to false positive structural variant calls. These ACRs are derived from the combination of two single-stranded DNA (ss-DNA) fragments with short reverse complementary regions (SRCRs). This package simulates these artifact chimeric reads as well as normal reads for FFPE samples on the whole genome / several chromosomes / large regions.

About

Summary

NGS Read Simulator for FFPE Tissue

Information Last Updated

Apr 22, 2025 at 15:29

License

LGPL-3

Total Downloads

15.6K

Platforms

noarch Version: 1.18.0