bioconductor-simffpe
NGS Read Simulator for FFPE Tissue
NGS Read Simulator for FFPE Tissue
To install this package, run one of the following:
The NGS (Next-Generation Sequencing) reads from FFPE (Formalin-Fixed Paraffin-Embedded) samples contain numerous artifact chimeric reads (ACRS), which can lead to false positive structural variant calls. These ACRs are derived from the combination of two single-stranded DNA (ss-DNA) fragments with short reverse complementary regions (SRCRs). This package simulates these artifact chimeric reads as well as normal reads for FFPE samples on the whole genome / several chromosomes / large regions.
Summary
NGS Read Simulator for FFPE Tissue
Information Last Updated
Apr 22, 2025 at 15:29
License
LGPL-3
Total Downloads
15.6K
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