bioconda / packages / bioconductor-simbu 1.0.0

Simulate Bulk RNA-seq Datasets from Single-Cell Datasets


  • noarch v1.0.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-simbu


SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. You can either use your own single-cell study for the simulation or the sfaira database. Different pre-defined simulation scenarios exist, as are options to run custom simulations. Additionally, expression values can be adapted by adding an mRNA bias, which produces more biologically relevant simulations.

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