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bioconda / packages / bioconductor-scoreinvhap 1.24.0

Get inversion status in predefined regions

Installers

Info: This package contains files in non-standard labels.
  • noarch v1.24.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-scoreinvhap
conda install bioconda/label/gcc7::bioconductor-scoreinvhap

Description

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.


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