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bioconda / packages / bioconductor-scgraphverse 1.0.0

scGraphVerse: A Gene Network Analysis Package

Installers

  • linux-64 v1.0.0
  • osx-64 v1.0.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-scgraphverse

Description

A package for inferring, comparing, and visualizing gene networks from single-cell RNA sequencing data. It integrates multiple methods (GENIE3, GRNBoost2, ZILGM, PCzinb, and JRF) for robust network inference, supports consensus building across methods or datasets, and provides tools for evaluating regulatory structure and community similarity. GRNBoost2 requires Python package 'arboreto' which can be installed using initpy(installmissing = TRUE). This package includes adapted functions from ZILGM (Park et al., 2021), JRF (Petralia et al., 2015), and learn2count (Nguyen et al. 2023) packages with proper attribution under GPL-2 license.


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