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bioconductor-scanmir

Community

scanMiR

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-scanmir

Usage Tracking

1.12.0
1.8.0
1.6.0
1.4.0
1.0.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

A set of tools for working with miRNA affinity models (KdModels), efficiently scanning for miRNA binding sites, and predicting target repression. It supports scanning using miRNA seeds, full miRNA sequences (enabling 3' alignment) and KdModels, and includes the prediction of slicing and TDMD sites. Finally, it includes utility and plotting functions (e.g. for the visual representation of miRNA-target alignment).

About

Summary

scanMiR

Last Updated

Dec 20, 2024 at 16:00

License

GPL-3

Total Downloads

7.1K

Supported Platforms

noarch