bioconda / packages / bioconductor-rsubread 2.4.0

Mapping, quantification and variant analysis of sequencing data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.4.0
  • osx-64  v2.4.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-rsubread
conda install -c bioconda/label/gcc7 bioconductor-rsubread
conda install -c bioconda/label/cf201901 bioconductor-rsubread

Description

Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.

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