bioconda / packages / bioconductor-rnaseqdata.hnrnpc.bam.chr14 0.26.0

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v0.26.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-rnaseqdata.hnrnpc.bam.chr14
conda install -c bioconda/label/gcc7 bioconductor-rnaseqdata.hnrnpc.bam.chr14

Description

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

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