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bioconductor-regionalpcs

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Summarizing Regional Methylation with Regional Principal Components Analysis

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-regionalpcs

Usage Tracking

1.4.0
1.0.0
2 / 8 versions selected
Total downloads: 0

Description

Functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.

About

Summary

Summarizing Regional Methylation with Regional Principal Components Analysis

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT + file LICENSE

Total Downloads

1.5K

Platforms

noarch Version: 1.4.0