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bioconductor-rcm

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Fit row-column association models with the negative binomial distribution for the microbiome

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-rcm

Usage Tracking

1.26.0
1.22.0
1.18.0
1.16.0
1.14.0
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Downloads (Last 6 months): 0

Description

Combine ideas of log-linear analysis of contingency table, flexible response function estimation and empirical Bayes dispersion estimation for explorative visualization of microbiome datasets. The package includes unconstrained as well as constrained analysis. In addition, diagnostic plot to detect lack of fit are available.

About

Summary

Fit row-column association models with the negative binomial distribution for the microbiome

Last Updated

Feb 28, 2026 at 17:36

License

GPL-2

Total Downloads

22.3K

Version Downloads

24

Supported Platforms

noarch