bioconductor-quantiseqr
Quantification of the Tumor Immune contexture from RNA-seq data
Quantification of the Tumor Immune contexture from RNA-seq data
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This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.
Summary
Quantification of the Tumor Immune contexture from RNA-seq data
Last Updated
Dec 22, 2024 at 03:46
License
GPL-3
Total Downloads
11.9K
Supported Platforms