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bioconductor-quantiseqr

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Quantification of the Tumor Immune contexture from RNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-quantiseqr

Usage Tracking

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Downloads (Last 6 months): 0

Description

This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.

About

Summary

Quantification of the Tumor Immune contexture from RNA-seq data

Last Updated

Dec 22, 2024 at 03:46

License

GPL-3

Total Downloads

11.9K

Supported Platforms

noarch