bioconda / packages / bioconductor-pth2o2lipids 1.14.0

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)


Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-pth2o2lipids
conda install -c bioconda/label/gcc7 bioconductor-pth2o2lipids


Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.

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