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bioconductor-profileplyr

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Visualization and annotation of read signal over genomic ranges with profileplyr

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-profileplyr

Usage Tracking

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Downloads (Last 6 months): 0

Description

Quick and straightforward visualization of read signal over genomic intervals is key for generating hypotheses from sequencing data sets (e.g. ChIP-seq, ATAC-seq, bisulfite/methyl-seq). Many tools both inside and outside of R and Bioconductor are available to explore these types of data, and they typically start with a bigWig or BAM file and end with some representation of the signal (e.g. heatmap). profileplyr leverages many Bioconductor tools to allow for both flexibility and additional functionality in workflows that end with visualization of the read signal.

About

Summary

Visualization and annotation of read signal over genomic ranges with profileplyr

Last Updated

Jan 4, 2025 at 01:48

License

GPL (>= 3)

Total Downloads

21.5K

Supported Platforms

noarch