bioconda / packages / bioconductor-probatch 1.4.0

Tools for Diagnostics and Corrections of Batch Effects in Proteomics

Installers

conda install

  • noarch  v1.4.0
To install this package with conda run:
conda install -c bioconda bioconductor-probatch

Description

These tools facilitate batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.

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