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bioconda / packages / bioconductor-podkat 1.34.0

Position-Dependent Kernel Association Test

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.34.0
  • linux-64 v1.34.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-podkat
conda install bioconda/label/cf201901::bioconductor-podkat
conda install bioconda/label/gcc7::bioconductor-podkat

Description

This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.


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