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bioconductor-podkat

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Position-Dependent Kernel Association Test

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-podkat

Usage Tracking

1.42.0
1.38.0
1.34.0
1.32.0
1.30.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

This package provides an association test that is capable of dealing with very rare and even private variants. This is accomplished by a kernel-based approach that takes the positions of the variants into account. The test can be used for pre-processed matrix data, but also directly for variant data stored in VCF files. Association testing can be performed whole-genome, whole-exome, or restricted to pre-defined regions of interest. The test is complemented by tools for analyzing and visualizing the results.

About

Summary

Position-Dependent Kernel Association Test

Last Updated

Mar 1, 2026 at 17:32

License

GPL (>= 2)

Total Downloads

52.2K

Version Downloads

317

Supported Platforms

linux-64
macOS-64