bioconda / packages / bioconductor-periodicdna 1.2.0

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Installers

conda install

  • noarch  v1.2.0
To install this package with conda run:
conda install -c bioconda bioconductor-periodicdna

Description

This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.


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