bioconductor-periodicdna
Set of tools to identify periodic occurrences of k-mers in DNA sequences
Set of tools to identify periodic occurrences of k-mers in DNA sequences
To install this package, run one of the following:
This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.
Summary
Set of tools to identify periodic occurrences of k-mers in DNA sequences
Last Updated
Dec 29, 2024 at 18:16
License
GPL-3 + file LICENSE
Total Downloads
10.7K
Supported Platforms