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bioconductor-periodicdna

Community

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-periodicdna

Usage Tracking

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Description

This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.

About

Summary

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Last Updated

Dec 29, 2024 at 18:16

License

GPL-3 + file LICENSE

Total Downloads

10.7K

Supported Platforms

noarch