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bioconda / packages / bioconductor-pasillabamsubset 0.40.0

Subset of BAM files from "Pasilla" experiment

Installers

Info: This package contains files in non-standard labels.
  • noarch v0.40.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-pasillabamsubset
conda install bioconda/label/gcc7::bioconductor-pasillabamsubset

Description

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.


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