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bioconductor-orfik

Community

Open Reading Frames in Genomics

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-orfik

Usage Tracking

1.26.0
1.22.0
1.20.0
1.18.0
1.14.7
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

R package for analysis of transcript and translation features through manipulation of sequence data and NGS data like Ribo-Seq, RNA-Seq, TCP-Seq and CAGE. It is generalized in the sense that any transcript region can be analysed, as the name hints to it was made with investigation of ribosomal patterns over Open Reading Frames (ORFs) as it's primary use case. ORFik is extremely fast through use of C++, data.table and GenomicRanges. Package allows to reassign starts of the transcripts with the use of CAGE-Seq data, automatic shifting of RiboSeq reads, finding of Open Reading Frames for whole genomes and much more.

About

Summary

Open Reading Frames in Genomics

Last Updated

Dec 21, 2024 at 23:21

License

MIT + file LICENSE

Total Downloads

34.6K

Supported Platforms

linux-64
macOS-64