bioconda / packages / bioconductor-openprimer 1.14.0

Multiplex PCR Primer Design and Analysis

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-openprimer
conda install -c bioconda/label/gcc7 bioconductor-openprimer

Description

An implementation of methods for designing, evaluating, and comparing primer sets for multiplex PCR. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected. A Shiny app providing a user interface for the functionalities of this package is provided by the 'openPrimeRui' package.


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