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bioconductor-omnipathr

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OmniPath web service client and more

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-omnipathr

Usage Tracking

3.18.4
3.10.1
3.8.0
3.5.25
3.2.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

A client for the OmniPath web service (https://www.omnipathdb.org) and many other resources. It also includes functions to transform and pretty print some of the downloaded data, functions to access a number of other resources such as BioPlex, ConsensusPathDB, EVEX, Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway, Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR features a close integration with the NicheNet method for ligand activity prediction from transcriptomics data, and its R implementation nichenetr (available only on github).

About

Summary

OmniPath web service client and more

Last Updated

Feb 9, 2026 at 08:11

License

MIT + file LICENSE

Total Downloads

20.3K

Version Downloads

40

Supported Platforms

noarch