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bioconductor-omnipathr

Community

OmniPath web service client and more

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-omnipathr

Usage Tracking

3.10.1
3.8.0
3.5.25
3.2.0
3.0.0
5 / 8 versions selected
Total downloads: 0

Description

A client for the OmniPath web service (https://www.omnipathdb.org) and many other resources. It also includes functions to transform and pretty print some of the downloaded data, functions to access a number of other resources such as BioPlex, ConsensusPathDB, EVEX, Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway, Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR features a close integration with the NicheNet method for ligand activity prediction from transcriptomics data, and its R implementation nichenetr (available only on github).

About

Summary

OmniPath web service client and more

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT + file LICENSE

Total Downloads

19.6K

Platforms

noarch Version: 3.10.1