bioconda / packages / bioconductor-normr 1.14.0

Normalization and difference calling in ChIP-seq data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.0
  • osx-64  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-normr
conda install -c bioconda/label/gcc7 bioconductor-normr

Description

Robust normalization and difference calling procedures for ChIP-seq and alike data. Read counts are modeled jointly as a binomial mixture model with a user-specified number of components. A fitted background estimate accounts for the effect of enrichment in certain regions and, therefore, represents an appropriate null hypothesis. This robust background is used to identify significantly enriched or depleted regions.

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