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bioconda / packages / bioconductor-nipalsmcia 1.0.0

Multiple Co-Inertia Analysis via the NIPALS Method

Installers

  • noarch v1.0.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-nipalsmcia

Description

Computes Multiple Co-Inertia Analysis (MCIA), a dimensionality reduction (jDR) algorithm, for a multi-block dataset using a modification to the Nonlinear Iterative Partial Least Squares method (NIPALS) proposed in (Hanafi et. al, 2010). Allows multiple options for row- and table-level preprocessing, and speeds up computation of variance explained. Vignettes detail application to bulk- and single cell- multi-omics studies.


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