bioconda / packages / bioconductor-msstatsshiny 1.0.0

MSstats GUI for Statistical Anaylsis of Proteomics Experiments


  • noarch v1.0.0

conda install

To install this package run one of the following:
conda install -c bioconda bioconductor-msstatsshiny


MSstatsShiny is an R-Shiny graphical user interface (GUI) integrated with the R packages MSstats, MSstatsTMT, and MSstatsPTM. It provides a point and click end-to-end analysis pipeline applicable to a wide variety of experimental designs. These include data-dependedent acquisitions (DDA) which are label-free or tandem mass tag (TMT)-based, as well as DIA, SRM, and PRM acquisitions and those targeting post-translational modifications (PTMs). The application automatically saves users selections and builds an R script that recreates their analysis, supporting reproducible data analysis.

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