bioconductor-msa2dist
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
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Description
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances MSA2dist calculates pairwise IUPAC distances.
About
Summary
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Information Last Updated
Apr 22, 2025 at 15:29
License
GPL-3 + file LICENSE
Total Downloads
5.7K
Platforms
Linux 64 Version: 1.10.0
macOS 64 Version: 1.10.0
Linux aarch64 Version: 1.10.0