bioconda / packages / bioconductor-mbased 1.22.0

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.14.0
  • osx-64  v1.14.0
  • noarch  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-mbased
conda install -c bioconda/label/gcc7 bioconductor-mbased
conda install -c bioconda/label/cf201901 bioconductor-mbased

Description

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.

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