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bioconda / packages / bioconductor-mbased 1.36.0

Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.14.0
  • osx-64 v1.14.0
  • noarch v1.36.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-mbased
conda install bioconda/label/cf201901::bioconductor-mbased
conda install bioconda/label/gcc7::bioconductor-mbased

Description

The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.


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