CMD + K

bioconductor-ledpred

Community

Learning from DNA to Predict Enhancers

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-ledpred

Usage Tracking

1.40.0
1.36.0
1.34.0
1.32.0
1.28.0
5 / 8 versions selected
Total downloads: 0

Description

This package aims at creating a predictive model of regulatory sequences used to score unknown sequences based on the content of DNA motifs, next-generation sequencing (NGS) peaks and signals and other numerical scores of the sequences using supervised classification. The package contains a workflow based on the support vector machine (SVM) algorithm that maps features to sequences, optimize SVM parameters and feature number and creates a model that can be stored and used to score the regulatory potential of unknown sequences.

About

Summary

Learning from DNA to Predict Enhancers

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT | file LICENSE

Total Downloads

24.1K

Platforms

noarch Version: 1.40.0