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bioconductor-ledpred

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Learning from DNA to Predict Enhancers

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-ledpred

Usage Tracking

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Downloads (Last 6 months): 0

Description

This package aims at creating a predictive model of regulatory sequences used to score unknown sequences based on the content of DNA motifs, next-generation sequencing (NGS) peaks and signals and other numerical scores of the sequences using supervised classification. The package contains a workflow based on the support vector machine (SVM) algorithm that maps features to sequences, optimize SVM parameters and feature number and creates a model that can be stored and used to score the regulatory potential of unknown sequences.

About

Summary

Learning from DNA to Predict Enhancers

Last Updated

Dec 14, 2024 at 16:46

License

MIT | file LICENSE

Total Downloads

24.5K

Supported Platforms

noarch