bioconductor-ledpred
Learning from DNA to Predict Enhancers
Learning from DNA to Predict Enhancers
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This package aims at creating a predictive model of regulatory sequences used to score unknown sequences based on the content of DNA motifs, next-generation sequencing (NGS) peaks and signals and other numerical scores of the sequences using supervised classification. The package contains a workflow based on the support vector machine (SVM) algorithm that maps features to sequences, optimize SVM parameters and feature number and creates a model that can be stored and used to score the regulatory potential of unknown sequences.
Summary
Learning from DNA to Predict Enhancers
Last Updated
Dec 14, 2024 at 16:46
License
MIT | file LICENSE
Total Downloads
24.5K
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