Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.
conda install bioconda::bioconductor-isoformswitchanalyzerconda install bioconda/label/cf201901::bioconductor-isoformswitchanalyzerconda install bioconda/label/gcc7::bioconductor-isoformswitchanalyzer
Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.