bioconda / packages / bioconductor-intad 1.12.0

Search for correlation between epigenetic signals and gene expression in TADs

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.12.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-intad
conda install -c bioconda/label/gcc7 bioconductor-intad

Description

The package is focused on the detection of correlation between expressed genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data) either within topologically associated domains (TADs) or between chromatin contact loop anchors. Various parameters can be controlled to investigate the influence of external factors and visualization plots are available for each analysis step.


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