bioconda / packages / bioconductor-impulsede 1.13.0

Detection of DE genes in time series data using impulse models

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.0
  • osx-64  v1.6.0
  • noarch  v1.13.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-impulsede
conda install -c bioconda/label/gcc7 bioconductor-impulsede
conda install -c bioconda/label/cf201901 bioconductor-impulsede

Description

ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

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