About Anaconda Help Download Anaconda

bioconda / packages / bioconductor-imcrtools 1.8.0

Methods for imaging mass cytometry data analysis

Installers

  • noarch v1.8.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-imcrtools

Description

This R package supports the handling and analysis of imaging mass cytometry and other highly multiplexed imaging data. The main functionality includes reading in single-cell data after image segmentation and measurement, data formatting to perform channel spillover correction and a number of spatial analysis approaches. First, cell-cell interactions are detected via spatial graph construction; these graphs can be visualized with cells representing nodes and interactions representing edges. Furthermore, per cell, its direct neighbours are summarized to allow spatial clustering. Per image/grouping level, interactions between types of cells are counted, averaged and compared against random permutations. In that way, types of cells that interact more (attraction) or less (avoidance) frequently than expected by chance are detected.


© 2024 Anaconda, Inc. All Rights Reserved. (v4.0.4) Legal | Privacy Policy