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bioconductor-imcdatasets

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Collection of publicly available imaging mass cytometry (IMC) datasets

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-imcdatasets

Usage Tracking

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Description

The imcdatasets package provides access to publicly available IMC datasets. IMC is a technology that enables measurement of > 40 proteins from tissue sections. The generated images can be segmented to extract single cell data. Datasets typically consist of three elements: a SingleCellExperiment object containing single cell data, a CytoImageList object containing multichannel images and a CytoImageList object containing the cell masks that were used to extract the single cell data from the images.

About

Summary

Collection of publicly available imaging mass cytometry (IMC) datasets

Last Updated

Dec 22, 2024 at 23:02

License

GPL-3 + file LICENSE

Total Downloads

11.0K

Supported Platforms

noarch