bioconda / packages / bioconductor-icetea 1.6.0

Integrating Cap Enrichment with Transcript Expression Analysis


Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-icetea
conda install -c bioconda/label/gcc7 bioconductor-icetea


icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions for end-to-end analysis of multiple 5'-profiling methods such as CAGE, RAMPAGE and MAPCap, beginning from raw reads to detection of transcription start sites using replicates. It also allows performing differential TSS detection between group of samples, therefore, integrating the mRNA cap enrichment information with transcript expression analysis.

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