bioconda / packages / bioconductor-htqpcr 1.48.0

Automated analysis of high-throughput qPCR data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.34.0
  • osx-64  v1.34.0
  • noarch  v1.48.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-htqpcr
conda install -c bioconda/label/gcc7 bioconductor-htqpcr
conda install -c bioconda/label/cf201901 bioconductor-htqpcr

Description

Analysis of Ct values from high throughput quantitative real-time PCR (qPCR) assays across multiple conditions or replicates. The input data can be from spatially-defined formats such ABI TaqMan Low Density Arrays or OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad Laboratories; conventional 96- or 384-well plates; or microfluidic devices such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).


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